Browsing by Subject "Amino acids"

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Challenges of green production of 2,5‐furandicarboxylic acid from bio‐derived 5‐hydroxymethylfurfural: Overcoming deactivation by concomitant amino acids
(2022) Neukum, Dominik; Baumgarten, Lorena; Wüst, Dominik; Sarma, Bidyut Bikash; Saraçi, Erisa; Kruse, Andrea; Grunwaldt, Jan‐Dierk
The oxidation of 5‐hydroxymethylfurfural (HMF) to 2,5‐furandicarboxylic acid (FDCA) is highly attractive as FDCA is considered as substitute for the petrochemically derived terephthalic acid. There are only few reports on the direct use of unrefined HMF solutions from biomass resources and the influence of remaining constituents on the catalytic processes. In this work, the oxidation of HMF in a solution as obtained from hydrolysis and dehydration of saccharides in chicory roots was investigated without intermediate purification steps. The amount of base added to the solution was critical to increase the FDCA yield. Catalyst deactivation occurred and was attributed to poisoning by amino acids from the bio‐source. A strong influence of amino acids on the catalytic activity was found for all supported Au, Pt, Pd, and Ru catalysts. A supported AuPd(2 : 1)/C alloy catalyst exhibited both superior catalytic activity and higher stability against deactivation by the critical amino acids.
A comprehensive characterization of agronomic and end-use quality phenotypes across a quinoa world core collection
(2023) Craine, Evan B.; Davies, Alathea; Packer, Daniel; Miller, Nathan D.; Schmöckel, Sandra M.; Spalding, Edgar P.; Tester, Mark; Murphy, Kevin M.
Quinoa (Chenopodium quinoa Willd.), a pseudocereal with high protein quality originating from the Andean region of South America, has broad genetic variation and adaptability to diverse agroecological conditions, contributing to the potential to serve as a global keystone protein crop in a changing climate. However, the germplasm resources currently available to facilitate quinoa expansion worldwide are restricted to a small portion of quinoa’s total genetic diversity, in part because of day-length sensitivity and issues related to seed sovereignty. This study aimed to characterize phenotypic relationships and variation within a quinoa world core collection. The 360 accessions were planted in a randomized complete block design with four replicates in each of two greenhouses in Pullman, WA during the summer of 2018. Phenological stages, plant height, and inflorescence characteristics were recorded. Seed yield, composition, thousand seed weight, nutritional composition, shape, size, and color were measured using a high-throughput phenotyping pipeline. Considerable variation existed among the germplasm. Crude protein content ranged from 11.24% to 17.81% (fixed at 14% moisture). We found that protein content was negatively correlated with yield and positively correlated with total amino acid content and days to harvest. Mean essential amino acids values met adult daily requirements but not leucine and lysine infant requirements. Yield was positively correlated with thousand seed weight and seed area, and negatively correlated with ash content and days to harvest. The accessions clustered into four groups, with one-group representing useful accessions for long-day breeding programs. The results of this study establish a practical resource for plant breeders to leverage as they strategically develop germplasm in support of the global expansion of quinoa.
Drying behavior and effect of drying temperatures on cyanide, bioactive compounds, and quality of dried cassava leaves
(2025) Chaiareekitwat, Sawittree; Nagle, Marcus; Mahayothee, Busarakorn; Khuwijitjaru, Pramote; Rungpichayapichet, Parika; Latif, Sajid; Müller, Joachim; Medana, Claudio
In this study, the drying behavior and quality of the dried leaves of cassava ( Manihot esculenta Crantz) of the ‘Rayong 5’ cultivar from Thailand were investigated. An increase in the drying temperature resulted in an increased drying rate and a reduction in drying time. The Page model provided the best fit for describing the drying characteristics of cassava leaves, with the entire drying process occurring in the falling rate period. The results showed that cyanide content was sensitive to high temperatures, with drying at 80 °C being the most effective method for toxin elimination. Prolonged drying periods lead to the degradation of vitamin C. Drying cassava leaves at 50–80 °C did not significantly affect β–carotene levels. However, lutein, chlorophyll– a , and chlorophyll– b were reduced after drying. The drying processes did not change the crude proteins content but increased the levels of histidine, alanine, and aspartic acid. In this study, high-temperature, short-time drying was identified as the optimal condition for detoxification, maintaining nutrients, and preserving the color of dried cassava leaves.
Factors influencing proteolysis and protein utilization in the intestine of pigs: A review
(2021) Kurz, Alina; Seifert, Jana
Pigs are among the most important farm animals for meat production worldwide. In order to meet the amino acid requirements of the animals, pigs rely on the regular intake of proteins and amino acids with their feed. Unfortunately, pigs excrete about two thirds of the used protein, and production of pork is currently associated with a high emission of nitrogen compounds resulting in negative impacts on the environment. Thus, improving protein efficiency in pigs is a central aim to decrease the usage of protein carriers in feed and to lower nitrogen emissions. This is necessary as the supply of plant protein sources is limited by the yield and the cultivable acreage for protein plants. Strategies to increase protein efficiency that go beyond the known feeding options have to be investigated considering the characteristics of the individual animals. This requires a deep understanding of the intestinal processes including enzymatic activities, capacities of amino acid transporters and the microbiome. This review provides an overview of these physiological factors and the respective analyses methods.
Guard cell‐specific metabolic responses to drought stress in maize
(2025) Lehr, Patrick Pascal; Erban, Alexander; Hartwig, Roman Paul; Wimmer, Monika Andrea; Kopka, Joachim; Zörb, Christian
Understanding crop responses to drought stress is crucial for securing future agricultural productivity. Guard cells regulate transpiration and thus the yield burden under drought conditions. Therefore, the influence of repeated drought stress on the guard cell metabolome of Zea mays L. was investigated to improve our understanding of crop resilience mechanisms. A controlled greenhouse experiment with physiological evaluation and a non‐targeted metabolomics approach was used to analyse unprimed and primed guard cells. Primed and unprimed maize plants showed similar overall physiological and metabolic responses to drought, with gas exchange and general metabolic patterns largely unaffected by priming. However, distinct priming effects emerged in specific metabolites. Metabolites of the alanine and aspartate pathway, as well as those of the glycine, serine and threonine pathway were less impacted by drought stress in guard cells than in mesophyll cells, suggesting the emphasis of plants to maintain stable guard cell metabolomes for functional integrity. In contrast, the increase in sugar concentrations in guard cells was similar to that in mesophyll cells, suggesting a pivotal role of sugars in guard cells during drought conditions. New insights into cell type‐specific metabolic responses to drought stress will contribute to a better understanding of stress memory in maize. Enhancing guard cell resilience could help optimise water use efficiency for sustainable agricultural production under climate change conditions.
Interactive effects of feed particle size, calcium, and exogenous phytase on gastrointestinal phytate degradation and related traits in broiler chickens
(2025) Wolfrum, Stephanie; Rodehutscord, Markus
Phosphorus (P) is an essential element in maintaining the physiological mechanisms of poultry, making an adequate dietary P supply crucial. In plant-based feed ingredients commonly used in poultry nutrition, the primary form of P is phytate, any salt of phytic acid (InsP6). Enzymes that hydrolyze InsP6, such as phytases and phosphatases, are needed to release P from InsP6 for digestion and absorption. The extent to which P is released depends on the limited and variable endogenous enzyme capacity of poultry. Consequently, diets are often supplemented with costly mineral P sources derived from finite global rock phosphates to meet P requirements. Any unabsorbed P is excreted and contributes to environmental impacts. Incorporating exogenous phytases into poultry diets enhances the P release from InsP6, thereby enabling reduced use of mineral P supplements. To further improve P utilization and completely replace supplemental mineral P, it is essential to understand the effects on phytase efficacy, both single and interactive. Therefore, three studies were conducted to gain deeper insight into the InsP6 degradation and related characteristics along the digestive tract of broiler chickens, as influenced by dietary ingredients and their physical properties. Using coarsely ground feed particles in broiler diets improves digestive tract development and nutrient utilization. Coarse particles may therefore be beneficial for InsP6 degradation. Moreover, dietary coarse particles might mitigate the inhibitory effects of high dietary calcium (Ca) concentrations by lowering the pH in the digestive tract. The first study aimed to investigate the single and interactive effects of feed particle size and Ca concentration in the absence and presence of exogenous phytase on InsP6 degradation, prececal digestibility of P, Ca, and amino acids (AA), and retention of P, Ca, and nitrogen (N). Ross 308 broiler chickens received experimental diets from day 7 to 22/23 of life. Experimental diets differed in feed particle size (fine and coarse; 222 and 309 μm), Ca concentration (low and high; 4.9 and 7.2 g/kg), and phytase supplementation (0 and 1,000 FTU/kg). Prececal InsP6 disappearance increased with coarse particle size without phytase supplementation. Supplemented phytase removed such differences. Coarse particles were associated with higher gizzard weights and lower gizzard content pH compared to fine particles, whereas high dietary Ca concentration increased the pH of the gizzard content. Thus, the antinutritive effects of the higher dietary Ca concentration were not mitigated by using coarse feed particles, resulting in a reduction in prececal InsP6 disappearance and digestibility of P and most of the AA. Prececal AA digestibility increased with dietary coarse particles compared to fine particles. In the presence of phytase, high dietary Ca enhanced InsP6 disappearance in the crop. The first study found that dietary coarsely ground feed particles without supplemented phytase increased prececal InsP6 disappearance, but phytase supplementation compensated for this particle size effect. Accordingly, the objective of the second study was to determine the single and interactive effects of feed particle size and phytase level. Effects on growth performance, prececal InsP6 disappearance, prececal digestibility of P and Ca, and tibia characteristics were examined. From day 10 to 38 of life, Ross 308 broilers were fed experimental diets containing fine and coarse feed particles (434 and 729 μm) and without and with phytase supplementation (300, 600, and 1,200 FTU/kg). Particle size and phytase did not interact significantly concerning any measured trait. Contrary to expectations, finely ground feed particles increased prececal InsP6 disappearance and P digestibility, suggesting coarse grinding of rapeseed meal may not benefit birds. Growth performance, prececal InsP6 disappearance and related P digestibility, as well as tibia ash and breaking strength, were increased by phytase supplementation. This indicated that diets met the bird’s P requirement at the given total P level and 1,200 FTU phytase/kg, allowing the renouncement of feed phosphate in the grower and finisher phases without adverse effects on performance and bones. Based on a previous study that found a linear relationship between the dietary InsP6 concentration and the prececal InsP6 disappearance caused by supplemented phytase, the third study aimed to verify this indication of a constant prececal InsP6 disappearance per unit of supplemented phytase. This suggested that the efficiency of supplemented phytase was not affected by dietary InsP6 concentration. The study investigated the effects of dietary InsP6 concentration and phytase supplementation on gastrointestinal InsP6 degradation, prececal digestibility of P, AA, and Ca, and N-corrected metabolizable energy (MEN) in broiler chickens. Ross 308 broilers were provided with diets from day 14 to 22/23 of life. Dietary InsP6 was increased by substituting corn starch with a mixture of 50 % soybean meal, 20 % rapeseed meal, 20 % sunflower meal, and 10 % rice bran (oilseed meal-rice bran levels (ORL)). Experimental diets included four dietary InsP6-P concentrations (ORL1, ORL2, ORL3, and ORL4) and three phytase levels (500, 1,500, and 3,000 FTU/kg). Feed ingredient exchange led to additional diet alterations beyond changes in InsP6 concentration, including variations in P, crude protein, Ca, and fiber concentrations. Increasing ORL decreased the InsP6 disappearance in the crop. Prececal InsP6 disappearance and P digestibility decreased linearly with increasing ORL at 500 FTU/kg, whereas ileal myo-inositol concentration was unaffected. This indicated that the supplemented phytase was the limiting factor for the complete dephosphorylation of InsP6 to myo-inositol. At 1,500 and 3,000 FTU/kg, prececal InsP6 disappearance and P digestibility differed hardly among ORL but decreased with increasing ORL. A non-linear relationship was found at 500 FTU/kg when prececal InsP6 disappearance or ileal myo-inositol concentration relative to FTU was regressed against dietary InsP6. Such relationships were linear at 1,500 and 3,000 FTU/kg, suggesting that the efficiency of supplemented phytase to fully hydrolyze InsP6 to myo-inositol at 1,500 FTU/kg or higher was impaired by phytase level but not ORL. The cecal InsP6 concentration increased with ORL and decreased with phytase. Increasing ORL decreased the prececal digestibility of all AA (except cysteine) and MEN. In conclusion, conflicting effects on InsP6 degradation concerning feed particle size and its effects on endogenous and supplemented enzymes were found. This suggests that using coarsely ground particles in the feed may not be equally effective for all ingredients. Rapeseed meal is potentially less suitable than wheat or corn in coarsely ground form. Regardless of phytase level, coarse feed particles increased prececal AA digestibility. Due to the inconsistent results and a lack of studies regarding feed particle size effects on InsP6 degradation and prececal AA digestibility, further research is needed. The antinutritive effects of dietary Ca on InsP6 degradation and prececal AA digestibility could not be compensated for by using coarse feed particles. To maximize nutrient utilization, feed particle size should be adapted to the respective raw material, and dietary Ca should be as low as possible without risking a deficit, combined with phytase. Supplemented phytase at 1,500 FTU/kg or higher does not impair InsP6 degradation and prececal AA digestibility in response to increasing ORL. Thus, adjusting the phytase level to increased dietary InsP6 concentrations was not necessary under the conditions of this study, and further research is necessary.
Metabolic rewiring compensates for the loss of amino acid biosynthesis in Bacillus subtilis
(2024) Yousef Mardoukhi, Mohammad Saba; Commichau, Fabian M.
Amino acids are considered as some of the earliest organic molecules to form on Earth. Serving as the building blocks of proteins, they are intricately connected to nearly every life process. Therefore, amino acid metabolism needs to be precisely regulated in any living organism. Amino acid metabolism includes the biochemical pathways responsible for the synthesis, degradation, and utilization of amino acids. Most of the bacteria, particularly the Gram-positive model bacterium Bacillus subtilis, have the capability to synthesize all proteinogenic amino acids or, if available, import them from the environment. Throughout evolution, different metabolic pathways have emerged to maintain metabolites level inside the cells. Some biosynthetic pathways are unknown as they are not primary routes or are typically inactive under normal conditions. However, they may become active under specific circumstances. Two very important pathways, previously not known to be substituted by alternative routes, involve de novo biosynthesis of glutamate, which is an essential amino group donor in every cell. Many bacteria can synthesize glutamate using a NADPH + H+-dependent glutamate dehydrogenase (GDH). Alternatively, glutamate can be produced by the combined action of the ATP-dependent glutamine synthetase (GS) and the NADPH + H+-dependent glutamate synthase (GOGAT). B. subtilis only employs the GS-GOGAT pathway for de novo synthesis of glutamate. In the context of this work, it was shown that a B. subtilis deficient for the GS-GOGAT pathway may employ the aspartase AnsB and aspartate transaminase AspB for the synthesis of glutamate in biologically significant amounts. Genetic analyses revealed that the aspartase AnsB converts ammonium and the tricarboxylic acid cycle intermediate fumarate to aspartate. Subsequently, the aspartate transaminase AspB transfers the amino group from aspartate to α-ketoglutarate, resulting in the production of L-glutamate and oxaloacetate. This observation challenges the well-established point of view of whether the GS-GOGAT-dependent pathway is indeed the only route for de novo synthesis of glutamate in nature. It was also set out to explore which amino acids could serve as the sole sources of carbon and nitrogen in the background of a B. subtilis strain that is a genetically stable glutamate auxotroph. The aim was to understand the conversion of the amino acids into glutamate and further to α-ketoglutarate, a reaction that is facilitated by the enzymatic activity of the GDHs RocG/GudB. It turned out that some of the amino acids are toxic for B. subtilis. However, B. subtilis can quickly develop resistance by the acquisition of mutations that result in reduced and enhanced amino acid uptake and export, respectively. Moreover, the toxicity of some amino acids may be reduced by increased degradation of glutamate. Furthermore, with focus on the toxicity of asparagine, it could be demonstrated that AimA, which has been characterized as a general amino acid importer, serves as a low affinity asparagine transporter in B. subtilis. Finally, AzlCD, which was previously described as an exporter for histidine and branched-chain amino acids, also exports asparagine. Thus, B. subtilis can adapt to amino acid toxicity in various ways.