Browsing by Subject "Hyperspectral reflectance"

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Integration of genotypic, hyperspectral, and phenotypic data to improve biomass yield prediction in hybrid rye
(2020) Galán, Rodrigo José; Bernal-Vasquez, Angela-Maria; Jebsen, Christian; Piepho, Hans-Peter; Thorwarth, Patrick; Steffan, Philipp; Gordillo, Andres; Miedaner, Thomas
Integrating cutting-edge technologies is imperative to sustainably breed crops for a growing global population. To predict dry matter yield (DMY) in winter rye (Secale cereale L.), we tested single-kernel models based on genomic (GBLUP) and hyperspectral reflectance-derived (HBLUP) relationship matrices, a multi-kernel model combining both matrices and a bivariate model fitted with plant height as a secondary trait. In total, 274 elite rye lines were genotyped using a 10 k-SNP array and phenotyped as testcrosses for DMY and plant height at four locations in Germany in two years (eight environments). Spectral data consisted of 400 discrete narrow bands ranging between 410 and 993 nm collected by an unmanned aerial vehicle (UAV) on two dates on each environment. To reduce data dimensionality, variable selection of bands was performed, resulting in the least absolute shrinkage and selection operator (Lasso) as the best method in terms of predictive abilities. The mean heritability of reflectance data was moderate ( h2 = 0.72) and highly variable across the spectrum. Correlations between DMY and single bands were generally significant (p < 0.05) but low (≤ 0.29). Across environments and training set (TRN) sizes, the bivariate model showed the highest prediction abilities (0.56–0.75), followed by the multi-kernel (0.45–0.71) and single-kernel (0.33–0.61) models. With reduced TRN, HBLUP performed better than GBLUP. The HBLUP model fitted with a set of selected bands was preferred. Within and across environments, prediction abilities increased with larger TRN. Our results suggest that in the era of digital breeding, the integration of high-throughput phenotyping and genomic selection is a promising strategy to achieve superior selection gains in hybrid rye.
Maize characteristics estimation and classification by spectral data under two soil phosphorus levels
(2022) Qiao, Baiyu; He, Xiongkui; Liu, Yajia; Zhang, Hao; Zhang, Lanting; Liu, Limin; Reineke, Alice-Jacqueline; Liu, Wenxin; Müller, Joachim
As an essential element, the effect of Phosphorus (P) on plant growth is very significant. In the early growth stage of maize, it has a high sensitivity to the deficiency of phosphorus. The main purpose of this paper is to monitor the maize status under two phosphorus levels in soil by a nondestructive testing method and identify different phosphorus treatments by spectral data. Here, the Analytical Spectral Devices (ASD) spectrometer was used to obtain canopy spectral data of 30 maize inbred lines in two P-level fields, whose reflectance differences were compared and the sensitive bands of P were discovered. Leaf Area Index (LAI) and yield under two P levels were quantitatively analyzed, and the responses of different varieties to P content in soil were observed. In addition, the correlations between 13 vegetation indexes and eight phenotypic parameters were compared under two P levels so as to find out the best vegetation index for maize characteristics estimation. A Back Propagation (BP) neural network was used to evaluate leaf area index and yield, and the corresponding prediction model was established. In order to classify different P levels of soil, the method of support vector machine (SVM) was applied. The results showed that the sensitive bands of P for maize canopy included 763 nm, 815 nm, and 900–1000 nm. P-stress had a significant effect on LAI and yield of most varieties, whose reduction rate reached 41% as a whole. In addition, it was found that the correlations between vegetation indexes and phenotypic parameters were weakened under low-P level. The regression coefficients of 0.75 and 0.5 for the prediction models of LAI and yield were found by combining the spectral data under two P levels. For the P-level identification in soil, the classification accuracy could reach above 86%. These abilities potentially allow for phenotypic parameters prediction of maize plants by spectral data and different phosphorus contents identification with unknown phosphorus fertilizer status.