Browsing by Subject "Phylogenetic analysis"

Now showing 1 - 2 of 2

Genetic variation, phylogenetic relationship and spatial distribution of ‘Candidatus Phytoplasma ulmi’ strains in Germany
(2020) Schneider, B.; Hüttel, B.; Zübert, C.; Kube, M.
A recent survey in Germany revealed the wide presence of ‘Candidatus Phytoplasma ulmi’ in native elm stands. Accessions were studied for their genetic variability and phylogenetic relationship based on the conserved groEL and the variable imp gene. While the groEL sequences revealed a high intraspecific homology of more than 99%, the homology of the imp gene dropped to 71% between distantly related sequences. Twenty-nine groEL and 74 imp genotypes were distinguished based on polymorphic sites. Phylogenetic analysis of the groEL gene clustered all ‘Ca. P. ulmi’ strains and separated them from related phytoplasmas of the 16SrV group. The inferred phylogeny of the imp gene resulted in a different tree topology and separated the ‘Ca. P. ulmi’ genotypes into two clusters, one closely related to the flavescence dorée phytoplasma strain FD-D (16SrV-D), the other affiliated with the flavescence dorée phytoplasma strains FD-C and FD70 and the alder yellows phytoplasma (16SrV-C). In both phylograms, ‘Ca. P. ulmi’ genotypes from Scots elm trees formed a coherent cluster, while genotypes from European white elms and field elms grouped less strictly. The regional distribution pattern was congruent for some of the groEL and imp genotypes, but a strict linkage for all genotypes was not apparent.
Morphological and molecular identification of sarcocystis arctica in captive cheetahs (Acinonyx jubatus) in China helps clarify phylogenetic relationships with Sarcocystis caninum and Sarcocystis felis
(2025) Liao, Zhe; Zhu, Niuping; Yang, Yurong; Deng, Shuangsheng; Jäkel, Thomas; Hu, Junjie; Salvarani, Felipe M.; Domingues, Sheyla Farhayldes Souza; Da Silveira, Júlia Angélica Gonçalves
To date, only one case is known where protozoan parasites of the genus Sarcocystis were found to infect cheetahs ( Acinonyx jubatus ); the cysts in the musculature were morphologically identified as S. felis . Here, we characterized sarcocysts by morphological and molecular methods that were observed in cheetahs who died in zoos in China. Only one type of sarcocyst was present in two of six cheetahs. By light microscopy, the sarcocyst wall was striated, 1.4–2.1 μm thick. Ultrastructurally, the wall had irregular-shaped, small villar protrusions, resembling wall type 9c, similar to those of S. arctica , S. caninum , and S. felis . The samples shared their highest molecular identity values with those of S. arctica and S. caninum : 99.9–100% and 99.8–100% (18S rRNA), 99.5% and 99.3–99.5% (28S rRNA), 95.9–97.5% and 96.3–97.3% (ITS-1), and 99.6% and 99.2–99.7% ( cox 1), respectively. Compared with ITS-1 of S. felis , identities ranged between 87.5% and 88.9%. Phylogenetic reconstruction revealed that the newly sequenced Sarcocystis clustered with S. arctica and S. caninum , whereas S. felis (ITS-1) and S. canis (ITS-1, 18S rRNA, cox 1) were sister species. Thus, we addressed the Sarcocystis species from the cheetahs as S. arctica , which is the first record of a Sarcocystis species believed to be specific for canids as intermediate hosts to infect a feline host.