Fakultät Agrarwissenschaften

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Die Fakultät entwickelt in Lehre und Forschung nachhaltige Produktionstechniken der Agrar- und Ernährungswirtschaft. Sie erarbeitet Beiträge für den ländlichen Raum und zum Verbraucher-, Tier- und Umweltschutz.

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Ableitung von Restitutionspotenzialen als Entscheidungshilfe bei der Umsetzung von Moorschutzprogrammen
(2005) Röhl, Markus; Böcker, Reinhard
As one of the last peatland-rich states of Germany, Baden-Württemberg possesses no self-standing, conservation program to protect its peatlands. Therefore, after consideration of the state administration, a strategy should be created in the next few years for a Baden-Württemberg peatland protection concept. With this in mind, a methodology for the derivation of peatland restitution potential was developed that can direct the future implementation of such a strategy. The exemplary methodology was developed for the nature conservation area ?Schwenninger Moos?, a medium sized former raised bog strongly disturbed by peat digging and agricultural amelioration. The results were applied to the entire surrounding bio-geographical region, the Baar and the Baaralb. Through this verification of the methodology, significant shortfalls in the state-wide dataset could become evident. As the basis of the evaluation of the restitution potential, data concerning the water level, trophy, and species and biotypes in Schwenninger Moos were collected. The water level of Schwenninger Moos was documented through 34 water gauges, the data from which was analysed through various methods. The half-year median and the combined examination of amplitude, average, and minimum values proved especially suitable for the characterisation of the sites. The trophic classifications of the sites were compared through measuring the principal nutrient levels, pH and conductivity values, as well as the C/N ratio. The vegetation of the investigation area was mapped and the results were subsequently compared to the mapping of biotypes of Baden-Württemberg, the mapping performed in the frame of Natura 2000, as well as that of indicator species groups. The mapping of indicator-species groups proved particularly suitable for the appraisal of the current status of a moor complex. The available data on the mires from the peatland register of Baden-Württemberg were somewhat old (40 years). Therefore these data were verified through comparison-boring and continued measurement by means of georadar. Significant differences arose in a number of comparisons between the peatland register and the author?s investigations with respect to the positional accuracy and the stratum sequence. The derivation of the restitution potential was carried out through the combination of three separate assessments: rewetting-possibility, biotic potential, and conversion potential. These three factors were derived through verbal-argument and brought together in a simple, five-step classification. The rewetting-possibility of an area is the main factor determining the restitution, and it depends considerably on drainage systems, topography, condition of the peat, and the water level. The biotic potential consists of the presence of peat-producing plants and the effects of rewetting on populations of endangered species. The conversion potential is essentially dependent on the dominant uses, ownership and social framework. The methodology was applied to altogether 34 peatland complexes of the Baar and Baaralb. The identification of these locations was only possible by a laborious combination of the peatland register, pedological cartography and conservation-oriented publications. It was found that the peatland register exhibited substantial deficits regarding the classification of small and shallow-layered locations in the Baar. Data concerning vegetation and the occurrence of animals and plants were available for the derivation of the restitution potential. However, some of these proved too old and/or too inaccurate or not spatially verified. Little to no data were present as to the water balance and drainage systems. Only three of the 34 locations exhibited a high restitution potential. 23,5% were classified as having moderate restitution potential; most of these sites are already under protection as nature conservation sites. A slight restitution potential was present in a total of 38.2% of the mire complexes, which consist mostly of small-scale spring mires and intensively agriculturally and silviculturally used locations. Likewise, 29.4% of the moorlands exhibited no more restitution potential. For the implementation of a state-wide mire protection program in the context of the investigation, the substantial deficits were pointed out and recommendations for action were formulated. Primarily, an updated and complete peatland register must be available. Furthermore, vegetation and endangered species maps of the entire peatland complexes protected as high conservation value areas should be available. It is in this regard that a system of indicator vegetation units of south German mires is to be aimed for, as is employed in northeast Germany, for example. Lists of priority sites should be made by regional teams of experts for the respective moor regions or administrative districts.
Ammonium uptake, mediated by ammonium transporters, mitigates manganese toxicity in duckweed, Spirodela polyrhiza
(2023) Kishchenko, Olena; Stepanenko, Anton; Straub, Tatsiana; Zhou, Yuzhen; Neuhäuser, Benjamin; Borisjuk, Nikolai
Nitrogen is an essential nutrient that affects all aspects of the growth, development and metabolic responses of plants. Here we investigated the influence of the two major sources of inorganic nitrogen, nitrate and ammonium, on the toxicity caused by excess of Mn in great duckweed, Spirodela polyrhiza. The revealed alleviating effect of ammonium on Mn-mediated toxicity, was complemented by detailed molecular, biochemical and evolutionary characterization of the species ammonium transporters (AMTs). Four genes encoding AMTs in S. polyrhiza, were classified as SpAMT1;1, SpAMT1;2, SpAMT1;3 and SpAMT2. Functional testing of the expressed proteins in yeast and Xenopus oocytes clearly demonstrated activity of SpAMT1;1 and SpAMT1;3 in transporting ammonium. Transcripts of all SpAMT genes were detected in duckweed fronds grown in cultivation medium, containing a physiological or 50-fold elevated concentration of Mn at the background of nitrogen or a mixture of nitrate and ammonium. Each gene demonstrated an individual expression pattern, revealed by RT-qPCR. Revealing the mitigating effect of ammonium uptake on manganese toxicity in aquatic duckweed S. polyrhiza, the study presents a comprehensive analysis of the transporters involved in the uptake of ammonium, shedding a new light on the interactions between the mechanisms of heavy metal toxicity and the regulation of the plant nitrogen metabolism.
Automatic classification of submerged macrophytes at Lake Constance using laser bathymetry point clouds
(2024) Wagner, Nike; Franke, Gunnar; Schmieder, Klaus; Mandlburger, Gottfried; Wagner, Nike; Department of Geodesy and Geoinformation, TU Wien, Wiedner Hauptstr. 8-10, 1040 Vienna, Austria;; Franke, Gunnar; Institute of Landscape and Plant Ecology (320), University of Hohenheim, Ottilie-Zeller-Weg 2, 70599 Stuttgart, Germany; (G.F.); (K.S.); Schmieder, Klaus; Institute of Landscape and Plant Ecology (320), University of Hohenheim, Ottilie-Zeller-Weg 2, 70599 Stuttgart, Germany; (G.F.); (K.S.); Mandlburger, Gottfried; Department of Geodesy and Geoinformation, TU Wien, Wiedner Hauptstr. 8-10, 1040 Vienna, Austria;; Stateczny, Andrzej
Submerged aquatic vegetation, also referred to as submerged macrophytes, provides important habitats and serves as a significant ecological indicator for assessing the condition of water bodies and for gaining insights into the impacts of climate change. In this study, we introduce a novel approach for the classification of submerged vegetation captured with bathymetric LiDAR (Light Detection And Ranging) as a basis for monitoring their state and change, and we validated the results against established monitoring techniques. Employing full-waveform airborne laser scanning, which is routinely used for topographic mapping and forestry applications on dry land, we extended its application to the detection of underwater vegetation in Lake Constance. The primary focus of this research lies in the automatic classification of bathymetric 3D LiDAR point clouds using a decision-based approach, distinguishing the three vegetation classes, (i) Low Vegetation, (ii) High Vegetation, and (iii) Vegetation Canopy, based on their height and other properties like local point density. The results reveal detailed 3D representations of submerged vegetation, enabling the identification of vegetation structures and the inference of vegetation types with reference to pre-existing knowledge. While the results within the training areas demonstrate high precision and alignment with the comparison data, the findings in independent test areas exhibit certain deficiencies that are likely addressable through corrective measures in the future.
Biomonitoring via DNA metabarcoding and light microscopy of bee pollen in rainforest transformation landscapes of Sumatra
(2022) Carneiro de Melo Moura, Carina; Setyaningsih, Christina A.; Li, Kevin; Merk, Miryam Sarah; Schulze, Sonja; Raffiudin, Rika; Grass, Ingo; Behling, Hermann; Tscharntke, Teja; Westphal, Catrin; Gailing, Oliver; Carneiro de Melo Moura, Carina; Department of Forest Genetics and Forest Tree Breeding, University of Göttingen, Göttingen, Germany; Setyaningsih, Christina A.; Department of Palynology and Climate Dynamics, Albrecht-von-Haller-Institute for Plant Sciences, University of Göttingen, Göttingen, Germany; Li, Kevin; Agroecology, Department of Crop Sciences, University of Göttingen, Göttingen, Germany; Merk, Miryam Sarah; Statistics and Econometrics, University of Göttingen, Göttingen, Germany; Schulze, Sonja; Agroecology, Department of Crop Sciences, University of Göttingen, Göttingen, Germany; Raffiudin, Rika; Department of Biology, IPB University ID, Bogor, Indonesia; Grass, Ingo; Department of Ecology of Tropical Agricultural Systems, University of Hohenheim, Stuttgart, Germany; Behling, Hermann; Department of Palynology and Climate Dynamics, Albrecht-von-Haller-Institute for Plant Sciences, University of Göttingen, Göttingen, Germany; Tscharntke, Teja; Agroecology, Department of Crop Sciences, University of Göttingen, Göttingen, Germany; Westphal, Catrin; Functional Agrobiodiversity, Department of Crop Sciences, University of Göttingen, Göttingen, Germany; Gailing, Oliver; Centre of Biodiversity and Sustainable Land Use, University of Göttingen, Göttingen, Germany
Background: Intense conversion of tropical forests into agricultural systems contributes to habitat loss and the decline of ecosystem functions. Plant-pollinator interactions buffer the process of forest fragmentation, ensuring gene flow across isolated patches of forests by pollen transfer. In this study, we identified the composition of pollen grains stored in pot-pollen of stingless bees, Tetragonula laeviceps , via dual-locus DNA metabarcoding (ITS2 and rbcL ) and light microscopy, and compared the taxonomic coverage of pollen sampled in distinct land-use systems categorized in four levels of management intensity (forest, shrub, rubber, and oil palm) for landscape characterization. Results: Plant composition differed significantly between DNA metabarcoding and light microscopy. The overlap in the plant families identified via light microscopy and DNA metabarcoding techniques was low and ranged from 22.6 to 27.8%. Taxonomic assignments showed a dominance of pollen from bee-pollinated plants, including oil-bearing crops such as the introduced species Elaeis guineensis (Arecaceae) as one of the predominant taxa in the pollen samples across all four land-use types. Native plant families Moraceae, Euphorbiaceae, and Cannabaceae appeared in high proportion in the analyzed pollen material. One-way ANOVA (p > 0.05), PERMANOVA (R² values range from 0.14003 to 0.17684, for all tests p-value > 0.5), and NMDS (stress values ranging from 0.1515 to 0.1859) indicated a lack of differentiation between the species composition and diversity of pollen type in the four distinct land-use types, supporting the influx of pollen from adjacent areas. Conclusions: Stingless bees collected pollen from a variety of agricultural crops, weeds, and wild plants. Plant composition detected at the family level from the pollen samples likely reflects the plant composition at the landscape level rather than the plot level. In our study, the plant diversity in pollen from colonies installed in land-use systems with distinct levels of forest transformation was highly homogeneous, reflecting a large influx of pollen transported by stingless bees through distinct land-use types. Dual-locus approach applied in metabarcoding studies and visual pollen identification showed great differences in the detection of the plant community, therefore a combination of both methods is recommended for performing biodiversity assessments via pollen identification.
Biomonitoring von Fluorwasserstoff : neue Ansätze zum Einsatz Höherer Pflanzen als Akkumulationsindikatoren
(2009) Blanckart, Peter; Fangmeier, Andreas
The standardised grass culture as described in VDI guideline 3957 sheet 2 has successfully been used for years to identify pollution related effects and to assess pollution load with hydrogen fluoride. At the moment, two directives are in preparation for the evaluation of the results from the exposure of standardised grass cultures which provide scales for judging and values for orientation on the basis of detailed studies. The directives will be published as VDI 3857 sheet 1 and sheet 2 as green print in 2009. The directive VDI 2310 sheet 3 is being revised as well. Its publication (green print) is also expected for 2009. According to no. 5.3 of the directive VDI 3957 sheet 2, samples with less than 2 g of dry substance have to be rejected. However, the rejection of these samples leads to a time gap for assessing of 14 days or even of 4 weeks. In this context it should be tested how the accumulation of fluoride after exposure with air containing hydrogen fluoride would be affected at lower growth rates. It should also be tested if samples of exposed grass with a minimum weight of less than the required 2 g of dry substance can be used for determining the pollution situation. To evaluate these problems, exposures were performed with standardised grass cultures and with modified methodology in an area ? the city of Ransbach-Baumbach ? which is highly contaminated by fluorides. Parallel to bioindication, the fluoride concentration in the air was assessed with radial symmetric passive samplers as a physicochemical method. By this means a direct comparison of the concentration of air pollutants with the pollutant concentration in the grass could be performed. The tests confirmed that the study area is indeed quite contaminated with fluoride from anthropogenic sources. The area around Ransbach-Baumbach can be considered as a hot-spot for higher fluoride concentrations within Germany. The results confirm that fluoride pollution in Central Europe is still an ongoing problem, even though the pollution is mostly scattered and small scale limited. Therefore, evaluation fundamentals for bioindication methods for fluoride (passive and active) should be worked out for the future, although fluoride accumulations are no longer regularly determined in large scale bioindication monitoring networks. The application of Deschampsia flexuosa (L.) Trin. as an accumulation indicator as a possible alternative to Lolium multiflorum Lam. could not be confirmed in this study; the deviations of fluoride concentrations in Deschampsia flexuosa (L.) Trin. and in Lolium multiflorum Lam. were too large in the spatiotemporal comparison. The measurements performed with radialsymmetric passive samplers did not show a good relationship between the hydrogen fluoride concentration in the air and the fluoride concentration F- [µg g-1 ds] in the Lolium grass cultures. There were only very low correlations between the fluoride concentration and the increase of biomass as raw and dry weight of Lolium multiflorum Lam. (R2 of 0.0258 and 0.0099 at two measurement stations, respectively). Since conventionally an R2 of ≥ 0,6 is required to indicate significant relationships in ecological/ecotoxicological field studies, no link between the increase of biomass and fluoride concentration for the accumulation indicator Lolium multiflorum Lam. is concluded. Therefore, it is recommended to revise the VDI guideline 3957 sheet 2 so that standardised grass culture samples of less than 2 g dry substance are also accounted for in the determination of the accumulation of air pollutants like fluoride in plants.
Bird and insect pollinators differ in specialization and potential pollination services along disturbance and resource gradients
(2023) Neu, Alexander; Cooksley, Huw; Esler, Karen J.; Pauw, Anton; Roets, Francois; Schurr, Frank M.; Schleuning, Matthias
Combined studies of the communities and interaction networks of bird and insect pollinators are rare, especially along environmental gradients. Here, we determined how disturbance by fire and variation in sugar resources shape pollinator communities and interactions between plants and their pollinating insects and birds. We recorded insect and bird visits to 21 Protea species across 21 study sites and for 2 years in Fynbos ecosystems in the Western Cape, South Africa. We recorded morphological traits of all pollinator species (41 insect and nine bird species). For each site, we obtained estimates of the time since the last fire (range: 2–25 calendar years) and the Protea nectar sugar amount per hectare (range: 74–62 000 g/ha). We tested how post‐fire age and sugar amount influence the total interaction frequency, species richness and functional diversity of pollinator communities, as well as pollinator specialization (the effective number of plant partners) and potential pollination services (pollination service index) of insects and birds. We found little variation in the total interaction frequency, species richness and functional diversity of insect and bird pollinator communities, but insect species richness increased with post‐fire age. Pollinator specialization and potential pollination services of insects and birds varied differently along the environmental gradients. Bird pollinators visited fewer Protea species at sites with high sugar amount, while there was no such trend for insects. Potential pollination services of insect pollinators to Protea species decreased with increasing post‐fire age and resource amounts, whereas potential pollination services of birds remained constant along the environmental gradients. Despite little changes in pollinator communities, our analyses reveal that insect and bird pollinators differ in their specialization on Protea species and show distinct responses to disturbance and resource gradients. Our comparative study of bird and insect pollinators demonstrates that birds may be able to provide more stable pollination services than insects.
Development of assessment tools for Lake Sevan (Armenia) by the application of remote sensing data and geographic information systems (GIS) techniques
(2011) Agyemang, Thomas Kwaku; Schmieder, Klaus
Lake Sevan is the biggest source of water in Armenia. Its littoral zone, in addition to being a food source and a substrate for macrophytes, algae and invertebrates, provide refuge and spawning habitats for both young & old organisms especially fishes. Between 1933 and 1960s, the lake level had been lowered by 20 m below the original level by increasing the lake outflow intermittently for irrigation and electricity generation. This evidently had ecological and economical consequences on the lake ecosystem. The importance of assessing the accuracy of spatial data classifications derived from remote sensing methods and used in geographic information system (GIS) analyses has been regarded as a critical component of many projects. In this project, supervised classified QuickBird satellite imageries of both submersed macrophytes and landcover types (emersed vegetation) of the Gavaraget, Tsovazard and Masrik Regions of the study area were validated in a GIS environment. The results of these assessments were represented by error matrices presenting the overall accuracy, the user and producer accuracies in each category, as well as the kappa coefficients. For submersed macrophytes at the vegetation level, the overall accuracy ranging between 77-88% was achieved in all the investigation years. Alga blooms in the different years impacted on the accuracy of the classification. However, even through severe algal blooms user accuracies between 55% and 95% were achieved. On the other hand, at the growth type level, the overall accuracy was as high as over 70% and as low as below 49%. For emersed vegetation types, predominantly high overall accuracies of more than 70% were obtained in 2 of the investigation years. Above all, in 2008, only slight overall accuracy could be obtained. For reeds areas, high user accuracies of more than 78% could be obtained, while for shrubs, trees, no vegetation and grasses in the different years, very different classification accuracies were attained. Two habitat suitability models (one for fishes and one for birds) were built in a GIS environment in this project. While the Crucian Carp (Carassius auratus Gibelio Bloch) was chosen as lead species for the fish habitat, the Common Coot (Fulica atra) and the Great Crested Grebe (Podiceps cristatus) were chosen for the bird habitat models based on expert knowledge on Lake Sevan. Five fish habitat suitability classes were assigned in the model. There was a similar trend in the fish habitat areas in all the landscapes in Gavaraget, Tsovazard and Masrik regions. The habitat areas increased in 2007 and decreased in 2008. The increases in all the regions were the same (around 43%) while the highest reduction occurred in Gavaraget (47%) followed by Masrik (38%) and Tsovazard (25%) respectively. Apart from the reductions in habitat areas in 2008, there were severe decreases in the quality of the habitat areas in all the regions of interests. The increases and decreases were as a result of interannual fluctuations due to water level fluctuations and algal blooms of Lake Sevan. Also, for the bird habitat model, five classes were assigned. Tsovazard and Masrik had a similar trend in habitat areas with an initial increase in 2007 followed by a decrease in 2008. However, Gavaraget had reductions in 2007 and 2008. Again, in addition to the severe reductions in the habitat areas in 2008, there were severe decreases in the quality of the habitat areas in all the regions of interests. The changes in emersed macrophyte vegetations and the lake water level fluctuations effected the different changes in the bird habitat areas.
Effects of endophytic Bacillus spp. on accumulation and distribution of iron in the shoots of lowland rice grown under iron toxic conditions
(2023) Weinand, Tanja; Asch, Julia; Asch, Folkard
Background: The tolerance of plants against abiotic stresses can be greatly influenced by their interaction with microbes. In lowland rice (Oryza sativa) production, the iron toxicity of the soils constitutes a major constraint. Although there are tolerant cultivars, the mechanisms underlying the tolerance against excess iron are not fully understood. Even less is known about the role of microbes in the response to iron toxicity. Aim: In the study presented here, the effects of different Bacillus isolates on the accumulation and distribution of iron within the shoots of different rice cultivars grown under iron toxicity were analyzed. Methods: Three lowland rice cultivars with contrasting tolerance to iron toxicity (IR31785-58-1-2-3-3, Sahel 108, Suakoko 8) were inoculated with three Bacillus isolates (two B. pumilus and one B. megaterium) and, after 1 week, exposed to excess iron (1,000 ppm) for 8 days. Tolerance was evaluated by leaf symptom scoring. Results: Bacterial inoculation mitigated leaf symptoms in the sensitive cultivar IR31785-58-1-2-3-3 despite no significant differences in shoot iron concentration between inoculated and noninoculated plants. In the tolerant excluder cultivar, Suakoko 8, leaf symptoms were exacerbated when inoculated with B. pumilus Ni9MO12. While the total shoot Fe concentration was not affected in this bacteria × cultivar combination, the distribution of iron within the shoot was clearly disturbed. Tolerance to iron toxicity of the tolerant includer cultivar, Sahel 108, was not affected by Bacillus inoculation. Conclusion: In conclusion, our results show that Bacillus inoculation can affect the tolerance of lowland rice to iron toxicity and that the effects strongly depend on the bacteria × cultivar combination.
Equifinality, sloppiness and emergent minimal structures of biogeochemical models
(2019) Marschmann, Gianna; Streck, Thilo
Process-based biogeochemical models consider increasingly the control of microorganisms on biogeochemical processes. These models are used for a number of important purposes, from small-scale (mm-cm) controls on pollutant turnover to impacts of global climate change. A major challenge is to validate mechanistic descriptions of microbial processes and predicted emergent system responses against experimental observations. The validity of model assumptions for microbial activity in soil is often difficult to assess due to the scarcity of experimental data. Therefore, most complex biogeochemical models suffer from equifinality, i.e. many different model realizations lead to the same system behavior. In order to minimize parameter equifinality and prediction uncertainty in biogeochemical modeling, a key question is to determine what can and cannot be inferred from available data. My thesis aimed at solving the problem of equifinality in biogeochemical modeling. Thereby, I opted to test a novel mathematical framework (the Manifold Boundary Approximation Method) that allows to systematically tailor the complexity of biogeochemical models to the information content of available data.
Evaluation der Richtlinienkonformität von Verträglichkeitsprüfungen nach Artikel 6 Flora-Fauna-Habitat-Richtlinie in der Planungspraxis
(2011) Matthäus, Gunther; Dieterich, Martin
The dissertation presents findings of a study on the practical implementation of the Habitats Direktive, Art. 6 (3). The formal und methodological quality of 50 appropriate assessments according to the Habitats-Direktive was analysed. Overall, a solid or even high to very high level of quality was found. Only few assessments exhibited serious shortcomings or mistakes with relevant effects on the finding of the assessments. These shortcomings coud be avoided by the introdiktion of binding quality standards.
Floral visitation to alien plants is non‐linearly related to their phylogenetic and floral similarity to native plants
(2022) Razanajatovo, Mialy; Rakoto Joseph, Felana; Rajaonarivelo Andrianina, Princy; van Kleunen, Mark
Biological invasions are key to understanding ecological processes that determine the formation of novel interactions. Alien species can negatively impact floral visitation to native species, but native species may also facilitate early establishment of closely related alien species by providing a preadapted pollinator community. We tested whether floral visitation to alien species depended on phylogenetic relatedness and floral similarity to native species. In a field experiment, we simulated the early stages of an invasion by adding potted alien plants into co‐flowering native communities. We paired each alien plant with a host native plant, and recorded floral visitation to them for 3,068 hr (totalling 84,814 visits). We used 34 alien and 20 native species in 151 species combinations. We tested whether the number of floral visits to alien plants, the proportion of visits to alien plant relative to visits to both alien and native plants, and the similarity in flower visitor compositions of alien and native plants depended on phylogenetic and floral trait distances between alien and native species. Floral visitation to alien species was highest when they had intermediate floral trait distances to native species, and either low or high phylogenetic distances. Alien species received more similar flower‐visitor groups to natives when they had low phylogenetic and either low or high floral trait distances to native species. Co‐flowering native species may facilitate floral visitation to closely related alien species, and distantly related alien plants seem to avoid competition for flower visitors with native plants. Alien species with similar floral traits to natives compete with them for flower visitors, and alien species with dissimilar floral traits may not share flower visitors with native species. Alien species with intermediate floral trait distances to natives are most likely to receive flower visitors, as they are not too dissimilar and may still share flower visitors with native species, but not too similar to compete for flower visitors with them. The non‐linear patterns between floral visitation and similarity of the alien and native species suggest that an interplay of facilitation and competition simultaneously drives the formation of novel plant‐pollinator interactions.
The genome reduction excludes the ribosomal rescue system in acholeplasmataceae
(2022) Zübert, Christina; Ilic, Anna-Marie; Duduk, Bojan; Kube, Michael
The trans-translation process is a ribosomal rescue system for stalled ribosomes processing truncated mRNA. The genes ssrA and smpB fulfil the key functions in most bacteria, but some species have either lost these genes or the function of the ribosomal rescue system is taken over by other genes. To date, the ribosomal rescue system has not been analysed in detail for the Acholeplasmataceae. This family, in the Mollicutes class, comprises the genus Acholeplasma and the provisional taxon “Candidatus Phytoplasma”. Despite their monophyletic origin, the two clades can be separated by traits such as not representing primary pathogens for acholeplasmas versus being phytopathogenic for the majority of phytoplasmas. Both taxa share reduced genomes, but only phytoplasma genomes are characterised by a remarkable level of instability and reduction. Despite the general relevance of the ribosomal rescue system, information is lacking on coding, the genomic context and pseudogenisation of smpB and ssrA and their possible application as a phylogenetic marker. Herein, we provide a comprehensive analysis of the ribosomal rescue system in members of Acholeplasmataceae. The examined Acholeplasmataceae genomes encode a ribosomal rescue system, which depends on tmRNA encoded by ssrA acting in combination with its binding protein SmpB. Conserved gene synteny is evident for smpB, while ssrA shows a less conserved genomic context. Analysis of the tmRNA sequences highlights the variability of proteolysis tag sequences and short conserved sites at the 5′- and 3′-ends. Analyses of smpB provided no hints regarding the coding of pseudogenes, but they did suggest its application as a phylogenetic marker of Acholeplasmataceae – in accordance with 16S rDNA topology. Sequence variability of smpB provides sufficient information for species assignment and phylogenetic analysis.
Growth responses of three European weeds on different AMF species during early development
(2022) Säle, Verena; Sieverding, Ewald; Oehl, Fritz
Arbuscular mycorrhizal fungi (AMF) have multiple functions in agroecosystems and affect many processes below- and aboveground, including plant productivity. Mycorrhizal symbiosis is not necessarily beneficial for the host plant and the growth response can be not only positive but also neutral or negative. Among other factors, the responsiveness of plants to AMF depends on the plant-fungus combination. To find out whether the AMF species or isolate is a decisive factor for growth responses of weeds, 44 AMF isolates were tested in a pot experiment for their effects on three agricultural weeds: Echinochloa crus-galli, Solanum nigrum and Papaver rhoeas. The 44 isolates cover 18 AMF species from 13 genera and all 5 orders of the Glomeromycota. The aboveground biomass of the weeds was determined after different times of growth of each weed. In most cases, the effects of AMF isolates on weed growth were negative or neutral. We conclude that some weed species do not benefit from AMF in terms of growth. AMF species can even cause negative growth responses, an effect that may be of practical interest for organic farming where the aim is to obtain a high diversity and concentration of native AMF for the benefit of the cultivated crops without increasing the labor for mechanical weeding.
Increases in functional diversity of mountain plant communities is mainly driven by species turnover under climate change
(2023) Schuchardt, Max A.; Berauer, Bernd J.; Duc, Anh Le; Ingrisch, Johannes; Niu, Yujie; Bahn, Michael; Jentsch, Anke
Warming in mountain regions is projected to be three times faster than the global average. Pronounced climate change will likely lead to species reshuffling in mountain plant communities and consequently change ecosystem resilience and functioning. Yet, little is known about the role of inter‐ versus intraspecific changes of plant traits and their consequences for functional richness and evenness of mountain plant communities under climate change. We performed a downslope translocation experiment of intact plant‐soil mesocosms from an alpine pasture and a subalpine grassland in the Swiss and Austrian Alps to simulate an abrupt shift in climate and removal of dispersal barriers. Translocated plant communities experienced warmer and dryer climatic conditions. We found a considerable shift from resource conservative to resource acquisitive leaf‐economy in the two climate change scenarios. However, shifts in leaf‐economy were mainly attributable to species turnover, namely colonization by novel lowland species with trait expressions for a wider range of resource use. We also found an increase in vegetative height of the warmed and drought‐affected alpine plant community, while trait plasticity to warming and drought was limited to few graminoid species of the subalpine plant community. Our results highlight the contrast between the strong competitive potential of novel lowland species in quickly occupying available niche space and native species' lack of both the intraspecific trait variability and the plant functional trait expressions needed to increase functional richness under warming and drought. This is particularly important for the trailing range of many mountain species (i.e. subalpine zone) where upward moving lowland species are becoming more abundant and abiotic climate stressors are likely to become more frequent in the near future. Our study emphasizes mountain plant communities' vulnerability to novel climates and biotic interactions under climate change and highlights graminoid species as potential winners of a warmer and dryer future. Keywords: alpine grassland, functional diversity, invasion, species turnover, traitspace, translocation
Increasing plant species richness by seeding has marginal effects on ecosystem functioning in agricultural grasslands
(2023) Freitag, Martin; Hölzel, Norbert; Neuenkamp, Lena; van der Plas, Fons; Manning, Peter; Abrahão, Anna; Bergmann, Joana; Boeddinghaus, Runa; Bolliger, Ralph; Hamer, Ute; Kandeler, Ellen; Kleinebecker, Till; Knorr, Klaus‐Holger; Marhan, Sven; Neyret, Margot; Prati, Daniel; Le Provost, Gaëtane; Saiz, Hugo; van Kleunen, Mark; Schäfer, Deborah; Klaus, Valentin H.
Experimental evidence shows that grassland plant diversity enhances ecosystem functioning. Yet, the transfer of results from controlled biodiversity experiments to naturally assembled ‘real world’ ecosystems remains challenging due to environmental variation among sites, confounding biodiversity ecosystem functioning relations in observational studies. To bridge the gap between classical biodiversity‐ecosystem functioning experiments and observational studies of naturally assembled and managed ecosystems, we created regionally replicated, within‐site gradients of species richness by seeding across agricultural grasslands differing in land‐use intensity (LUI) and abiotic site conditions. Within each of 73 grassland sites, we established a full‐factorial experiment with high‐diversity seeding and topsoil disturbance and measured 12 ecosystem functions related to productivity, and carbon and nutrient cycling after 4 years. We then analysed the effects of plant diversity (seeded richness as well as realized richness), functional community composition, land use and abiotic conditions on the ecosystem functions within (local scale) as well as among grassland sites (landscape scale). Despite the successful creation of a within‐site gradient in plant diversity (average increase in species richness in seeding treatments by 10%–35%), we found that only one to two of the 12 ecosystem functions responded to realized species richness, resulting in more closed nitrogen cycles in more diverse plant communities. Similar results were found when analysing the effect of the seeding treatment instead of realized species richness. Among sites, ecosystem functioning was mostly driven by environmental conditions and LUI. Also here, the only functions related to plant species richness were those associated with a more closed nitrogen cycle under increased diversity. The minor effects of species enrichment we found suggest that the functionally‐relevant niche space is largely saturated in naturally assembled grasslands, and that competitive, high‐functioning species are already present. Synthesis: While nature conservation and cultural ecosystem services can certainly benefit from plant species enrichment, our study indicates that restoration of plant diversity in naturally assembled communities may deliver only relatively weak increases in ecosystem functioning, such as a more closed nitrogen cycle, within the extensively to moderate intensively managed agricultural grasslands of our study.
Insect conservation in agricultural landscapes needs both high crop heterogeneity and semi-natural habitats
(2024) Tassoni, Sara; Becker, David; Kasten, Marit Kinga; Moriníere, Jérôme; Grass, Ingo
Identifying landscapes that are suitable for both biodiversity conservation and agricultural production is a major challenge. Traditionally, much research has focused on biodiversity conservation outside of agricultural production areas, e.g., in semi-natural habitats. In contrast, recent research has mainly focused on the potential of crop heterogeneity. This includes both compositional (crop diversity) and configurational heterogeneity (field border density). However, if and how crop heterogeneity, and semi-natural habitats interact to shape insect diversity in agricultural landscapes remains poorly understood. Here we investigated the combined effects of crop diversity, field border density, and semi-natural habitats (i.e., grassland proportion, hedge density) on insect diversity. We sampled insect communities from 14 – 17 June 2021 with pan traps in 27 study landscapes (500 m x 500 m) covering independent gradients of these landscape variables and identified a total of 587 insect species with DNA metabarcoding. We found that field border density mediated the effects of crop diversity, grassland proportion, and hedge density on insect richness. At low levels of field border density (i.e., landscapes with mostly large fields), effects were either neutral (crop diversity), negative (grassland proportion) or weakly positive (hedge density). By contrast, at high levels of field border density, crop diversity, grassland proportion, and hedge density all exerted positive effects on insect richness. Responses to crop heterogeneity and semi-natural habitat differed among trophic groups of insects (decomposers, herbivores, parasitoids, predators). While variation in richness of herbivorous insects followed the patterns of the overall richness, decomposer richness was not related to any of the investigated variables. Predator richness increased with hedge density in landscapes, whereas parasitoid richness increased when high levels of field border density and grassland proportion coincided. Our study shows that increasing crop heterogeneity is a viable strategy for promoting insect diversity in agricultural landscapes. However, the effects of the amount of remaining semi-natural habitats, such as grassland or hedges, are mediated by configurational heterogeneity, and vary between trophic groups. Efforts to conserve insects in agricultural landscapes must therefore focus on both increasing the heterogeneity of the crop matrix by promoting crop diversity and increasing the density of field borders, while also maintaining or restoring semi-natural habitats as important source habitats for insect species.
Interactions between protea plants and their animal mutualists and antagonists are structured more by energetic than morphological trait matching
(2022) Neu, Alexander; Cooksley, Huw; Esler, Karen J.; Pauw, Anton; Roets, Francois; Schurr, Frank M.; Schleuning, Matthias
Traits mediate mutualistic and antagonistic interactions between plants and animals, and should thus be useful for predicting trophic species interactions. Studies to date have examined the importance of morphological trait matching for plant–animal interactions, but have rarely explored the extent to which these interactions are shaped by matching between energetic provisions of plants and energetic demands of animals. We tested whether energetic and/or morphological trait matching shapes interactions between Protea plant species and their interacting animal mutualists and antagonists in the Cape Floristic Region, South Africa. We recorded interactions between 22 Protea species, pollinating insects and vertebrates as well as seed predators (endophagous insect larvae in protea cones) at 21 study sites. To relate species interactions to matching trait pairs, we measured key morphological traits (shape and size of flower heads and seed cones, and mouth part length as well as body length) and quantified the animals' energetic demands (metabolic rate) together with the plants' energetic provisions (nectar sugar amount, seed‐to‐cone mass ratio). We calculated log ratios of both energetic and morphological traits between animals and plants as predictor variables for the number of observed interactions between Protea species and their animal interaction partners. For both mutualistic and antagonistic interactions, we found significant effects of morphological and energetic trait ratios on the interactions between plants and animals. Trait ratios accounted for 11% to 22% of variation in species interactions. Consistent with energetic trait matching, we found a hump‐shaped relationship between interaction frequency and log ratios of energetic traits of animals and plants, indicating that interactions were most frequent at intermediate log ratios between energetic demand and provision. Effects of morphological trait ratios on interactions were statistically supported in most cases, but were variable in the magnitude and shape of the predicted relationships. Across animal taxa and interaction types, energetic traits had more consistent effects on interactions between plants and animals than morphological traits. This suggests that energy can function as an important interaction currency and facilitate the understanding and prediction of trophic species interactions.
Linking transcriptional dynamics of CH4-cycling grassland soil microbiomes to seasonal gas fluxes
(2022) Täumer, Jana; Marhan, Sven; Groß, Verena; Jensen, Corinna; Kuss, Andreas W.; Kolb, Steffen; Urich, Tim; Täumer, Jana; Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Greifswald, Germany; Marhan, Sven; Institute of Soil Science and Land Evaluation, Soil Biology Department, University of Hohenheim, Stuttgart, Germany; Groß, Verena; Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Greifswald, Germany; Jensen, Corinna; Human Molecular Genetics Group, Department of Functional Genomics, University Medicine Greifswald, Greifswald, Germany; Kuss, Andreas W.; Human Molecular Genetics Group, Department of Functional Genomics, University Medicine Greifswald, Greifswald, Germany; Kolb, Steffen; Thaer Institute, Faculty of Life Sciences, Humboldt University of Berlin, Berlin, Germany; Urich, Tim; Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Greifswald, Germany
AbstractSoil CH4 fluxes are driven by CH4-producing and -consuming microorganisms that determine whether soils are sources or sinks of this potent greenhouse gas. To date, a comprehensive understanding of underlying microbiome dynamics has rarely been obtained in situ. Using quantitative metatranscriptomics, we aimed to link CH4-cycling microbiomes to net surface CH4 fluxes throughout a year in two grassland soils. CH4 fluxes were highly dynamic: both soils were net CH4 sources in autumn and winter and sinks in spring and summer, respectively. Correspondingly, methanogen mRNA abundances per gram soil correlated well with CH4 fluxes. Methanotroph to methanogen mRNA ratios were higher in spring and summer, when the soils acted as net CH4 sinks. CH4 uptake was associated with an increased proportion of USCα and γ pmoA and pmoA2 transcripts. We assume that methanogen transcript abundance may be useful to approximate changes in net surface CH4 emissions from grassland soils. High methanotroph to methanogen ratios would indicate CH4 sink properties. Our study links for the first time the seasonal transcriptional dynamics of CH4-cycling soil microbiomes to gas fluxes in situ. It suggests mRNA transcript abundances as promising indicators of dynamic ecosystem-level processes.
Metabolization and sequestration of plant specialized metabolites in insect herbivores: Current and emerging approaches
(2022) Jeckel, Adriana Moriguchi; Beran, Franziska; Züst, Tobias; Younkin, Gordon; Petschenka, Georg; Pokharel, Prayan; Dreisbach, Domenic; Ganal-Vonarburg, Stephanie Christine; Robert, Christelle Aurélie Maud
Herbivorous insects encounter diverse plant specialized metabolites (PSMs) in their diet, that have deterrent, anti-nutritional, or toxic properties. Understanding how they cope with PSMs is crucial to understand their biology, population dynamics, and evolution. This review summarizes current and emerging cutting-edge methods that can be used to characterize the metabolic fate of PSMs, from ingestion to excretion or sequestration. It further emphasizes a workflow that enables not only to study PSM metabolism at different scales, but also to tackle and validate the genetic and biochemical mechanisms involved in PSM resistance by herbivores. This review thus aims at facilitating research on PSM-mediated plant-herbivore interactions.
Metabolome fingerprinting reveals the presence of multiple nitrification inhibitors in biomass and root exudates of Thinopyrum intermedium
(2024) Issifu, Sulemana; Acharya, Prashamsha; Schöne, Jochen; Kaur-Bhambra, Jasmeet; Gubry-Rangin, Cecile; Rasche, Frank
Biological Nitrification Inhibition (BNI) encompasses primarily NH4 +-induced release of secondary metabolites to impede the rhizospheric nitrifying microbes from per- forming nitrification. The intermediate wheatgrass Thinopyrum intermedium (Kernza®) is known for exuding several nitrification inhibition traits, but its BNI potential has not yet been identified. We hypothesized Kernza® to evince BNI potential through the presence and release of multiple BNI metabolites. The presence of BNI metabolites in the biomass of Kernza® and annual winter wheat (Triticum aestivum) and in the root exudates of hydroponically grown Kernza®, were fingerprinted using HPLC-DAD and GC–MS/MS analyses. Growth bioassays involving ammonia-oxidizing bacteria (AOB) and archaea (AOA) strains were conducted to assess the influence of the crude root metabolome of Kernza® and selected metabolites on nitrification. In most instances, significant concentrations of various metabolites with BNI potential were observed in the leaf and root biomass of Kernza® compared to annual winter wheat. Furthermore, NH4 + nutrition triggered the exudation of various phenolic BNI metabolites. Crude root exudates of Kernza® inhibited multiple AOB strains and completely inhibited N. viennensis. Vanillic acid, caffeic acid, vanillin, and phenylalanine suppressed the growth of all AOB and AOA strains tested, and reduced soil nitrification, while syringic acid and 2,6-dihydroxybenzoic acid were ineffective. We demonstrated the considerable role of the Kernza® metabolome in suppressing nitrification through active exudation of multiple nitrification inhibitors.

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